Package index
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cat_info_sep()
- Print an informational message with a preceding blank line
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cat_rule_sep()
- Print an informational 'separator' rule with a preceding blank line
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cfg_keys_all_valid()
- Check if config has any invalid keys
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collate_results_jul_2021()
- Collate results for July 2021
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collate_results_q1_2021()
- Collate results for Q1 2021
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drop_locn()
- Drop the name of the 'location' column from a vector of names
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ensure_cfg_param_types()
- Ensure parameters are of the expected type
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ensure_sys_env_vars()
- Ensure the presence of required system environment variables
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ensure_valid_env()
- Check the validity of a specified 'environment' string
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ensure_valid_phase()
- Check the validity of a specified 'phase' string
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env_should_run_hl_data_test()
- Check whether to run a particular high-level data test
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escape_txt()
- Escape special characters in the given string
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generate_cfg_template()
- Create a config template containing default values
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get_area_id_list()
- Get a list of unique MSOA area id's, possibly subsetted
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get_cfg()
- Get a configuration to use for a run.
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get_cfg_keys()
- Recursively list all keys in a config
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get_cfg_pkg_id()
- Get the package identifier for creating the user config path
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get_cfg_template_keys()
- Retrieve a character vector of expected config keys
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get_cfg_template_name()
- Retrieve the config template file name
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get_cfg_template_path()
- Retrieve the config template path
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get_cfg_val()
- Get a config value from the config
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get_cfg_val_msoa()
- Get the MSOA value from the config
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get_dat_path()
- Get a path value from the configuration
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get_grouping_vars()
- Get grouping variables for the time use survey data
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get_invalid_cfg_keys()
- Retrieve any invalid keys from a config
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get_most_popular_locn()
- Get most popular location for each activity
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get_path_components()
- Get path components from a path specification
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get_pkg_cfg_dir()
- Get the package config directory
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get_pop_dat()
- Get the wrangled population data
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get_req_sys_env_vars()
- Retrieve names of the required system environment variables
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get_root()
- Get the root path for an environment
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get_stratified_samp()
- Create a small stratified sample from the given data
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get_test_cfg()
- Test helper to create a test config
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get_test_cfg_exp_keys()
- Test helper to return expected keys for the test config
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get_tus_dat()
- Get the wrangled time use survey data
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get_user_cfg_dir()
- Retrieve the user-specific config dir
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get_user_cfg_name()
- Retrieve the user-specific config file name
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get_user_cfg_path()
- Retrieve the config file path
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`%notin%`
- Establish whether particular values exist in a vector.
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impute_missing()
- Impute missing location data
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impute_tus_dat()
- Impute missing tus data
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is_int_val()
- Tests if a value is an integer.
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is_r_cmd_check()
- Check if R CMD CHECK is currently running
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is_strict_vec()
- Check if an object is a vector
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local_mk_dir()
- Test helper to create a temporary directory
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local_sys_env_vars()
- Test helper to temporarily set sys env vars
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local_write_cfg()
- Test helper to write a test config to file
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parse_steps_to_run()
- Parse which steps to run from a string
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parse_string()
- Parse a string into a number, NA or to remain as a string
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path_from_components()
- Construct a file system path from a vector of individual path components
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plot_results_jul_2021()
- Plot results for July 2021
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plot_results_q1_2021()
- Plot results for Q1 2021
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process_activities()
- Process Activities data
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process_exposures_jul_2021()
- Process Exposures data for July 2021
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process_exposures_q1_2021()
- Process Exposures data for Q1 2021
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read_user_cfg()
- Read the YAML config file into a named list
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recurse_nested()
- Recursively apply a function to each element of a nested list
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run_data_prep_pm25_cams()
- Process the pm25 cams data
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run_data_prep_pm25_emep()
- Process the PM25 EMEP data
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run_data_prep_pm25_gm()
- Process the PM25 GM data
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run_data_prep_population()
- Process the Population data
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run_data_prep_study_region()
- Process the Study Region data
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run_data_prep_tus()
- Process the Time Use Survey data
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run_workflow()
- Run the steps in the data prep, analysis and visualisation workflow pipeline
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show_workflow_banner()
- Print a banner to the console ahead of running a step in the workflow
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skip_if_r_cmd_check_or_not_configured()
- Skip a test under certain conditions
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validate_cfg()
- Validate a config
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write_cfg_template()
- Write the configuration template to file
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write_user_cfg()
- Write the user-specific config to file